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Integration of new cohort infrastructures to the ELIXIR AAI https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1579263369349-QTQG0WUAHIYQWHF3QGJA/candig.png Blog - Integration of new cohort infrastructures to the ELIXIR AAI https://www.cineca-project.eu/blog-all/connectwithcineca monthly 0.5 2020-07-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1581341185704-CNSBZMRKG0XIUE8XLHIO/E%CC%81loi%CC%88se+Gennet.png Blog - Connect with CINECA - Dr. Éloïse Gennet https://www.cineca-project.eu/blog-all/connect-with-cineca-amanjeev-sethi monthly 0.5 2020-07-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1582886851369-1WLFCUNS633W6QSB6S3S/amanjeev-sethi.jpg Blog - Connect with CINECA - Amanjeev Sethi https://www.cineca-project.eu/blog-all/connect-with-cineca-saskia-hiltemann monthly 0.5 2020-07-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1585929384800-X8JQ08AILV2LY687TU9J/Open_Science_Logo.jpg Blog - Connect with CINECA - Saskia Hiltemann https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1585929359606-DPQXLLN50FQVJ7AYESGQ/foto_linkedin.jpg Blog - Connect with CINECA - Saskia Hiltemann https://www.cineca-project.eu/blog-all/cineca-sharing-patient-genomic-and-biomolecular-data-across-continents monthly 0.5 2020-07-30 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1589280694247-F2AUHNPFA05YOZEPGVJY/survey-data-transfer.png Blog - CINECA: Sharing patient genomic and biomolecular data across continents https://www.cineca-project.eu/blog-all/template-connect-with-cineca-emma-garlock monthly 0.5 2020-07-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1591359232890-GXFUOW9FLHQ9ZNU66IOU/emma.jpg Blog - Connect with CINECA - Emma Garlock https://www.cineca-project.eu/blog-all/home monthly 0.5 2020-07-29 https://www.cineca-project.eu/blog-all/cineca-and-the-elixir-federated-human-data-community monthly 0.5 2021-02-11 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1613038621794-LOHYLNLMKJU5F17NGWXF/Gary_Saunders.png Blog - CINECA Guest series - Gary Saunders - ELIXIR CINECA and the ELIXIR Federated Human Data Community. Dr. Gary Saunders, ELIXIR Human Data Coordinator, www.elixir-europe.org https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74 monthly 0.5 2020-07-29 https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74-6smhx-2sf8x monthly 0.5 2020-07-29 https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74-6smhx-2sf8x-552xg-lyxm5 monthly 0.5 2020-09-28 https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74-6smhx-2sf8x-552xg-y4e2t monthly 0.5 2020-07-29 https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74-6smhx-2sf8x-552xg-wsskh monthly 0.5 2020-11-11 https://www.cineca-project.eu/blog-all/data-management-plan-v1-d74-6smhx-2sf8x-552xg-rrp42 monthly 0.5 2021-03-24 https://www.cineca-project.eu/blog-all/sustainability-and-smes monthly 0.5 2020-08-17 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1597672944294-T3DJU2Z21G03VUHX0J8Q/CINECA_+personal+health+train.jpg Blog - Sustainability and SMEs Personal Health Train — Credit: Armin Roth, University of Tübingen https://www.cineca-project.eu/blog-all/data-harmonization-and-enrichment-using-embl-ebi-ontology-tools monthly 0.5 2020-09-10 https://www.cineca-project.eu/blog-all/solutions-for-overcoming-cohort-data-integration-challenges-using-ontology-an-introduction monthly 0.5 2023-03-16 https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies monthly 0.5 2020-09-21 https://www.cineca-project.eu/blog-all/uncovering-metadata-from-semi-structured-cohort-data monthly 0.5 2022-01-19 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1600158943066-CGAZY6S5J2O8G5K9KL4S/CINECA+text+mining+blog+Fig1.jpg Blog - Uncovering metadata from semi-structured cohort data Figure 1: Ontology annotation of Sample attribute-value using Zooma https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1600159013773-MBS9DOBEWIZ5T340OOQV/CINECA+text+mining+blog+Fig2.jpg Blog - Uncovering metadata from semi-structured cohort data Figure 2: Neo4j cluster for lexically similar pairs https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies-9nre7-x4pfa-bmfp4-3k5n9 monthly 0.5 2021-03-24 https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies-9nre7-x4pfa monthly 0.5 2020-11-11 https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies-9nre7-dwkyb monthly 0.5 2020-11-12 https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies-9nre7 monthly 0.5 2020-11-12 https://www.cineca-project.eu/blog-all/annotating-data-using-ontologies-9nre7-x4pfa-bmfp4 monthly 0.5 2021-03-24 https://www.cineca-project.eu/blog-all/lexmapr-a-rule-based-text-mining-tool-for-ontology-term-mapping-and-classification monthly 0.5 2022-01-19 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1602110387118-UCU5J8BD68CDVJKJ171D/LexMapr.002.jpeg.001.jpeg Blog - LexMapr - A rule-based text-mining tool for ontology term mapping and classification Figure 2: LexMapr Ontology-Driven Classification https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1602159453354-JXTFE7F1CUSGFXYLEZI6/LexMapr.001.jpg Blog - LexMapr - A rule-based text-mining tool for ontology term mapping and classification Figure 1: High Level Architecture of LexMapr https://www.cineca-project.eu/blog-all/nanogalaxy-nanopore-long-read-sequencing-data-analysis-in-galaxy monthly 0.5 2020-11-12 https://www.cineca-project.eu/blog-all/assigning-standard-descriptors-to-free-text monthly 0.5 2022-01-19 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1604417918965-3SMQ3CSHMI5OCU5DJTP8/pipeline_norm.png Blog - Assigning standard descriptors to free text Figure 1: Biomedical normalisation pipeline with an example https://www.cineca-project.eu/blog-all/galactic-circos-user-friendly-circos-plots-within-the-galaxy-platform monthly 0.5 2020-11-12 https://www.cineca-project.eu/blog-all/biomedical-named-entity-recognition-pros-and-cons-of-rule-based-and-deep-learning-methods monthly 0.5 2022-01-19 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1607692971043-P858IW3PQU6FY5EJ33T9/image3.png Blog - Biomedical Named entity recognition - Pros and cons of rule-based and deep learning methods Figure 3: A hybrid approach to identify named entities in the Europe PMC articles. It is a fast and reliable way to benefit from the deep-learning approach. We are restricting false positive identifications of a dictionary-based approach in addition to the unverified novel entities from the machine learning method through the hybrid approach. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1607692807976-9XS1GLDE9PCP7CNCGDZJ/image2.png Blog - Biomedical Named entity recognition - Pros and cons of rule-based and deep learning methods Figure 1 (b) The dictionary or rule-based named entity recognition (NER) systems are popular, although there are certain challenges associated with them. This figure highlights some of these dictionary-based NER challenges. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1607693028975-IQSUH0NX8LWA4OJU47P3/image4.png Blog - Biomedical Named entity recognition - Pros and cons of rule-based and deep learning methods Figure 2: Schematic of the BERT model (Devlin et al. 2019). The pre-training phase creates the language model and the fine-tuning provides the task-specific parameter tuning. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1607729621069-PS69AA195HGSDUQ84MJL/image1.jpg Blog - Biomedical Named entity recognition - Pros and cons of rule-based and deep learning methods Figure 1 (a) An example of the dictionary-based entity recognition system. Due to predefined vocabulary or rules, dictionary and rule-based approaches are unable to identify ambiguous abbreviations or novel entity name variations. https://www.cineca-project.eu/blog-all/annotating-data-using-next-generation-biobanking-ontology-ngbo monthly 0.5 2020-12-14 https://www.cineca-project.eu/blog-all/applying-data-standards-to-the-harmonization-of-covid-19-datasets-from-different-sources monthly 0.5 2022-01-24 https://www.cineca-project.eu/blog-all/query-expansion-variant-expansion monthly 0.5 2022-02-02 https://www.cineca-project.eu/blog-all/useful-ontologies-for-harmonizing-cohort-data monthly 0.5 2022-01-24 https://www.cineca-project.eu/blog-all/implementation-of-ga4gh-standards-in-cineca monthly 0.5 2021-11-17 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1612480003562-NQHI9L4XDOOW13YFH8WY/image1.png Blog - Implementation of GA4GH standards in CINECA Figure 1: Overview of GA4GH, depicting how the driver projects work with specific work streams depending on their requirements. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1612480450815-TABLMXJCBFUYP9W19BG0/image2.png Blog - Implementation of GA4GH standards in CINECA Figure 2: After data has been uploaded to EGA and a user granted access, using the htsget standard genomic regions can be streamed to remote locations securely. This allows visualisation of regions of files, for example using Integrated Genomic Viewer (IGV), or even on-the-fly analysis of files hosted at EGA, for example in the Embassy Cloud. https://www.cineca-project.eu/blog-all/annotating-data-using-next-generation-biobanking-ontology monthly 0.5 2021-02-08 https://www.cineca-project.eu/blog-all/query-expansion-ontology-expansion monthly 0.5 2022-02-02 https://www.cineca-project.eu/blog-all/beacon-cohorts-a-model-for-cohort-discovery-in-cineca-and-beyond monthly 0.5 2021-07-29 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1614954679177-EULQCVIXEX7LW27FNERL/image3.png Blog - Beacon cohorts: A model for cohort discovery in CINECA and beyond Figure 1. Beacon v2 API allows for more extended queries while keeping its design simple and easy to use. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1614954899817-AYKGXLMI9FIGKFPYAG8K/image2.jpg Blog - Beacon cohorts: A model for cohort discovery in CINECA and beyond Figure 2. Beacon cohort model field blocks https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1614955172325-VN807HAMN9I4JRHOMJ7I/image1.jpg Blog - Beacon cohorts: A model for cohort discovery in CINECA and beyond Figure 3. Cohorts in the Beacon v2 schema (simplified version) https://www.cineca-project.eu/blog-all/a-common-framework-for-designing-portable-federated-pipelines monthly 0.5 2021-11-22 https://www.cineca-project.eu/blog-all/framework-and-apis-for-executing-federated-genomics-analyses-d42 monthly 0.5 2021-03-22 https://www.cineca-project.eu/blog-all/query-expansion-service-d12 monthly 0.5 2021-03-18 https://www.cineca-project.eu/blog-all/catalogue-of-canadian-european-and-african-ethical-and-legal-gaps-d72 monthly 0.5 2021-03-22 https://www.cineca-project.eu/blog-all/cohort-minimal-metadata-model-d31 monthly 0.5 2021-05-03 https://www.cineca-project.eu/blog-all/passport-is-the-glue-between-the-researcher-data-and-computing monthly 0.5 2022-02-07 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1617365690392-0ER7MKK7NR8Z30OGT62O/image1.png Blog - Passport is the glue between the researcher, data and computing https://www.cineca-project.eu/blog-all/how-fair-are-you-webinar-series-and-hackathon monthly 0.5 2021-10-08 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1623062004261-HQKOBLO86TRZ8S88SO1L/image3.png Blog - "How FAIR are You" webinar series and hackathon - Make it stand out Fig 3. FAIR principles raking from the hackathon participants. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1623062686810-3KH64JUMI7QGHJFEK8TJ/image2.jpg Blog - "How FAIR are You" webinar series and hackathon - Make it stand out Fig 1. Word cloud poll collected from the hackathon participants based on the question "In one word, what comes to your mind when you see the word "FAIR"? https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1623061954491-UV6IAKUZZACFGE2LLL4J/image1.png Blog - "How FAIR are You" webinar series and hackathon - Make it stand out Fig 2. Participant distribution in the three streams: Cohort data (34%), Training material (27%), Software tools (39%) https://www.cineca-project.eu/blog-all/powering-up-data-discovery-and-access-using-the-data-use-ontology monthly 0.5 2021-07-29 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620039068159-02WWP3MK8KKRCYA4P18W/image4.png Blog - Powering up data discovery and access using the Data Use Ontology Pictures credit Stephanie Li, GA4GH. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620039179909-T3P125Y9GNNZJMK6S46M/image1.png Blog - Powering up data discovery and access using the Data Use Ontology https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620039263752-VCC31FF9MZAOJ37KOSI6/image2.png Blog - Powering up data discovery and access using the Data Use Ontology Pictures credit Stephanie Li, GA4GH. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620039314058-FV2TL49A7BXM6EU8OO35/image3.png Blog - Powering up data discovery and access using the Data Use Ontology Pictures credit Stephanie Li, GA4GH. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620039242207-MOFXSMPGSPRW50CV5GAL/image5.png Blog - Powering up data discovery and access using the Data Use Ontology Pictures credit Stephanie Li, GA4GH. https://www.cineca-project.eu/blog-all/semantic-and-harmonisation-best-practice-d32 monthly 0.5 2021-12-22 https://www.cineca-project.eu/blog-all/joint-variant-genotyping-use-case monthly 0.5 2021-10-08 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1626173284701-PVTJNDD9HZNMRVHZRMAT/image1.png Blog - Joint Variant genotyping use case - Make it stand out Figure 1. GA4GH TES implementation https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1626173567700-KPEE91DR5TAXIX0TUCPI/image2.png Blog - Joint Variant genotyping use case - Make it stand out Figure 2. 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Events - Ethics/ELSI considerations - From FAIR to fair data sharing https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - Ethics/ELSI considerations - From FAIR to fair data sharing https://www.cineca-project.eu/news-events-all/application-of-fair-principles-in-the-cineca-project monthly 0.5 2021-05-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - Application of FAIR Principles in the CINECA project https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1617885159910-Y0KY6P4Y3GDKKGMV2SGB/KEANE_Thomas-3.jpg News & Events - Application of FAIR Principles in the CINECA project https://www.cineca-project.eu/news-events-all/how-fair-are-you-hackathon monthly 0.5 2021-05-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1608213247443-JF9MW12U844PGEFQU7F3/FAIR.jpg News & Events - “How FAIR are you” Hackathon https://www.cineca-project.eu/news-events-all/how-fair-are-you-webinar-series-and-hackathon monthly 0.5 2021-03-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1608213247443-JF9MW12U844PGEFQU7F3/FAIR.jpg News & Events - “How FAIR are you” Webinar Series and Hackathon https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - “How FAIR are you” Webinar Series and Hackathon https://www.cineca-project.eu/news-events-all/on-line-training-on-ga4gh-passports monthly 0.5 2021-08-31 https://www.cineca-project.eu/news-events-all/international-data-sharing monthly 0.5 2022-01-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631805073912-VT2DRTQMD59YRWUD5CON/speaker2.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631797126419-LX6OW9XMMN6W95WQVAVK/image001.jpg News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631835224634-QHWD8QUPYYHORYC5YX6H/speaker5.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631835263916-571DZSXBDO62Z31CNBKN/speaker6.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631835192075-QHL4EHDRS8YE07Y70OQY/speaker4.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631836338563-VY7DTDN0PD780LRD5P61/speaker3.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1631804783661-ZXDHXSK62V1W1CFEQTGZ/speaker1.png News & Events - International Data Sharing: Fostering Engagement, Transparency and Accountability - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/the-beacon-a-data-discovery-solution-in-genomics-and-health monthly 0.5 2022-01-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1628600781255-VKNGJBLZVZ4425JPN7AW/Beacon-graphics-v2-network-960x540.png News & Events - The Beacon: a data discovery solution in genomics and health https://www.cineca-project.eu/news-events-all/lighting-a-beacon-training-for-future-implementers monthly 0.5 2022-02-23 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1628600781255-VKNGJBLZVZ4425JPN7AW/Beacon-graphics-v2-network-960x540.png News & Events - Lighting a Beacon: training for (future) implementers https://www.cineca-project.eu/news-events-all/browsing-genomes-a-beacon-training-for-users monthly 0.5 2022-01-12 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1628600781255-VKNGJBLZVZ4425JPN7AW/Beacon-graphics-v2-network-960x540.png News & Events - Browsing genomes: a Beacon training for users https://www.cineca-project.eu/news-events-all/beacon-v2-reference-implementation-an-overview monthly 0.5 2022-02-23 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1628600781255-VKNGJBLZVZ4425JPN7AW/Beacon-graphics-v2-network-960x540.png News & Events - Beacon v2 Reference Implementation: An Overview https://www.cineca-project.eu/news-events-all/bringing-it-all-together-human-cohort-standards-tools-and-applications monthly 0.5 2022-04-08 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/03fadd78-fd2e-48df-9c8b-a57003e444f7/thumbnail_image001.jpeg News & Events - Bringing it all together: human cohort standards, tools and applications - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/a4b57301-03a9-4ca8-a06d-66ca62996a85/20220310_Melanie_Courtot_picture.png News & Events - Bringing it all together: human cohort standards, tools and applications - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/data-harmonization-workshop monthly 0.5 2022-07-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1583139837449-I0134SZWVC4DNBGSEBYQ/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - Data Harmonization workshop - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/modular-reproducible-workflows-federated-molecular-qtl-analysi monthly 0.5 2023-01-11 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/27da17fc-41af-4e56-a97d-2fe55649355d/kaur.jpeg News & Events - Modular and reproducible workflows for federated molecular QTL analysis - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1574961293695-WPH6CJWZ2AUQDROHU3WC/health-2082630_1280.jpg News & Events - Modular and reproducible workflows for federated molecular QTL analysis - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/federated-analysis-polygenic-risk-score monthly 0.5 2023-01-31 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1587598567692-U1Y7S0Q6HW98FKVFWGWW/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - Federated analysis for Polygenic Risk Score Calculations - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/ethical-legal-societal-issues-internation-genomic-data monthly 0.5 2023-02-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1578566527085-04MJ1YYS8G4SCQFG7UDG/business-1753098_1280.png News & Events - The case of data reuse: Ethical, legal, and societal issues in international genomic data access and sharing - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/91f8ed36-e010-4cda-b311-dedd2bcf8311/Melanie.jpg News & Events - The case of data reuse: Ethical, legal, and societal issues in international genomic data access and sharing - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/f92d8a45-5c2a-4170-9b05-a37eb4d11a40/emmanuelle.png News & Events - The case of data reuse: Ethical, legal, and societal issues in international genomic data access and sharing - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/news-events-all/federated-data-analysis-workshop monthly 0.5 2023-02-15 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1583139837449-I0134SZWVC4DNBGSEBYQ/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events - Federated data analysis workshop - Make it stand out Whatever it is, the way you tell your story online can make all the difference. https://www.cineca-project.eu/related-projects daily 0.75 2022-03-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1565883176747-G8USNTO35PAULJX4WFWT/Universitat+Pompeu+Fabra%2C+Barcelona.png Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1565701134793-ARH0J0RKYN517VVS9TZ6/image-asset.jpeg Related projects - euCanSHare An EU-Canada joint infrastructure for next-generation multi-Study Heart research euCanSHare is a H2020 project that aims at developing a translational research platform for cardiovascular data sharing between the EU and Canada. Once established, researchers will benefit from a consolidated one-stop, integrated resource to perform efficient and effective research based on data-driven approaches linking molecular, imaging, functional and clinical data. The end goal is tailor-made patient treatment and better cardiovascular disease outcomes. The project integrates more than 35 Canadian and European cohorts that make up over 1 million records, including -omics (genomics, transcriptomics, metabolomics, etc.), cardiac imaging and clinical data. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1565888241021-RAIW1VRMXLHTL8LGYSNG/bracelona+super+computing+centre.png Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1565888132512-YUU00KDEL5XJ1R69YP27/EUCANCan.jpg Related projects - EUCANCan European Canadian Cancer Network EUCANCan aims to build a federated infrastructure across EU and Canada to enable personalized medicine in oncology by the generation and sharing of harmonized genomic and phenotypic data. EUCANCan builds on work performed by its consortium members and related projects to align and interconnect existing infrastructures for the analysis and management of genomic oncology data. The EUCANCan network will be composed of reference nodes in Amsterdam, Barcelona, Berlin, Heidelberg, Paris and Toronto with strong research and clinical programs in the field of genomic oncology. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1566821926673-S3ZOWES9YE3Y0I49KL7F/Home Related projects - EUCAN-Connect A federated FAIR platform enabling large-scale analysis of high-value cohort data connecting Europe and Canada in personalized health EUCAN-Connect will enable large-scale integrated cohort data analysis for personalized and preventive healthcare across EU and Canada. This will be based on an open, scalable data platform for cohorts, researchers and networks, incorporating FAIR principles (Findable, Accessible, Interoperable, Reusable) for optimal reuse of existing data, and building on maturing federated technologies, with sensitive data kept locally and only results being shared and integrated, in line with key ELSI and governance guidelines. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1570037811756-729B8296Q6EE4PW3DZSU/umcg.png Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1566829883089-LWYTZM8KQAR4KSO3E9XW/iReceptor%2BPlus%2B.jpg Related projects - iReceptor Plus Architecture and tools for the query of antibody and t-cell receptor sequencing data repositories for enabling improved personalized medicine and immunotherapy iReceptor Plus aims to facilitate the sharing of AIRR-seq data among multiple institutions for a better understanding of the causes of infectious and autoimmune diseases and cancer. Its consortium of researchers from EU and Canada will address several key challenges to the optimal sharing of AIRR-seq data among public and industrial partners, such as patient privacy, intellectual property, data integration and harmonisation, to support early detection, identification of novel therapies and possibly reduce the social and economic burden of these diseases worldwide. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1566829916852-M29YBY4QF8MHVCNMNRJ7/Home Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1569863345276-ECFLPVP7P7FULUEWM71P/ReCoDID.png Related projects - ReCoDID Integrated human data repositories for infectious disease-related international cohorts to foster personalized medicine approaches to infectious disease research ReCoDID builds on existing infrastructures and partnerships to develop a sustainable model for the storage, curation and analyses of the complex data sets collected by infectious disease (ID)-related cohorts. Drawing from best practice and governance elaborated for similar initiatives, the repository will employ a federated model where a tiered permission system and cohort-specific hubs facilitate cohorts’ analysis of their own data, cross-cohort analyses and connections with the open science community within a clearly elaborated legal, ethical, and equitable framework. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1566830491615-ENBWBHXHHFRBM69X8QMJ/universita%CC%88tsklinikum+heidelberg.png Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Related projects https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Related projects https://www.cineca-project.eu/new-index daily 0.75 2022-02-02 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1583139837449-I0134SZWVC4DNBGSEBYQ/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg New Index https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558477061856-KXLBR3AYLRIRLXOX2X1R/cineca_cohorts.png New Index https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558477750996-FA7KJYBTVD0XKWADXAC6/cohortsTypesVolumes.png New Index https://www.cineca-project.eu/history daily 0.75 2019-07-12 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559666172417-S5UPG0OAPEFI4QDTUFES/CINECA-kickoff_1.JPG History CINECA project kickoff meeting group photo, January 2019 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg History https://www.cineca-project.eu/partners daily 0.75 2022-02-02 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558962564207-AZNN4PB8UY398X95HAHG/cineca-partners.png Partners Consortium partners and representation as SMEs, members of BBMRI & ELIXIR, GA4GH, and H3Africa projects. ELIXIR and BBMRI are country level members and therefore multiple institutions are affiliated. DNAStack is an associated partner. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Partners https://www.cineca-project.eu/governance daily 0.75 2019-06-05 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559167210993-K42VJVHSVFBERDRFB9EK/cineca-governance.jpg Governance CINECA Governance structure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Governance https://www.cineca-project.eu/work-packages daily 0.75 2021-09-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558625907741-2LZYPNW7PXPXGXFUQQJQ/workpackages.png Work packages Overview of the workflow for CINECA https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Work packages https://www.cineca-project.eu/deliverables daily 0.75 2022-03-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Deliverables https://www.cineca-project.eu/scientific-impact daily 0.75 2019-06-05 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558626056437-J148MNS08XUXZUPQIZ89/cineca-impact.png Scientific Impact CINECA Impact Overview https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Scientific Impact https://www.cineca-project.eu/cohorts daily 0.75 2019-11-15 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1573825882582-AS6SBW8PMXNGKSJWS79H/cohort_figure_updated_Nov2019.png Cohorts The diverse cohorts in the project representing >1.4 Million individuals in Europe, Canada, and Africa. CoLaus/PsyCoLaus are represented by the same logo. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Cohorts https://www.cineca-project.eu/webinars daily 0.75 2021-08-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Webinars https://www.cineca-project.eu/news-events daily 0.75 2021-09-20 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg News & Events https://www.cineca-project.eu/federated-data-discovery daily 0.75 2021-02-17 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Data Discovery https://www.cineca-project.eu/aai daily 0.75 2021-02-17 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg aai https://www.cineca-project.eu/harmonized-metadata daily 0.75 2019-06-13 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Harmonized Metadata https://www.cineca-project.eu/federated-data-analysis daily 0.75 2019-06-05 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Data Analysis https://www.cineca-project.eu/elsi daily 0.75 2019-06-05 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg elsi https://www.cineca-project.eu/images daily 0.75 2019-05-29 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559146928573-7RU9GFOQKF14XFPZWP37/image-asset.png images https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559146971901-UZPPBW5LSM12LP55487M/elsi.png images https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559146956587-69VIFZEP2WP3WNCP2Q8T/federated-analysis.png images https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559146941438-JWJSJMQWIZ78CO8OSXV2/image-asset.png images https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559146801629-5RGKLN6Q4E0MAUWQV5B7/Home images https://www.cineca-project.eu/partners/bbmri-eric daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168305368-XRRDO3ZHG791QO3K7WR6/BBMRI-ERIC.png Biobank and Biomolecular Resource Research Infrastructure Consortium https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Biobank and Biomolecular Resource Research Infrastructure Consortium https://www.cineca-project.eu/partners/crg daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168305927-A0PZXY3S4FQSP6VEYS5D/crg.jpeg Centre for Genomic Regulation https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Centre for Genomic Regulation https://www.cineca-project.eu/partners/cgo daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168900835-5VFBAEIEBTIDVU8II6RY/Clinicageno.png Clinicageno Limited https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Clinicageno Limited https://www.cineca-project.eu/partners/emc daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556019457-136TU9UT873EEROMQFVL/erasmus.png ERASMUS University Medical Centre Rotterdam https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg ERASMUS University Medical Centre Rotterdam https://www.cineca-project.eu/partners/embl-ebi daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556019433-UCWLUWB5IDTPMYSL3OGZ/embl_logo.png European Molecular Biology Laboratory, European Bioinformatics Institute https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg European Molecular Biology Laboratory, European Bioinformatics Institute https://www.cineca-project.eu/partners/csc daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556017907-KSUQR507CEUC3TH7CY9Y/csc-logo-teksti-en.png IT Center for Science https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg IT Center for Science https://www.cineca-project.eu/partners/mu daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168306968-65XPUXAZ9MOQ423TXWY5/MU.jpeg Masaryk University https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Masaryk University https://www.cineca-project.eu/partners/inserm daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168306149-K15C6MTCI6VR0B14IDHV/INSERM.jpeg National Institute for Health and Medical Research https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg National Institute for Health and Medical Research https://www.cineca-project.eu/partners/mcg daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556018788-0K75EVAJHBUDI2CUNWA8/1200px-McGill_University_CoA.svg.png Royal Institution for the Advancement of Learning, McGill University https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Royal Institution for the Advancement of Learning, McGill University https://www.cineca-project.eu/partners/sib daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556019948-19PSWJM7J3Y6HJS9YG0A/SIB_logo.jpg SIB Swiss Institute of Bioinformatics https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg SIB Swiss Institute of Bioinformatics https://www.cineca-project.eu/partners/sfu daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168307164-MFQYS4EFST5VS9LBFXPW/SFU.png sfu https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg sfu https://www.cineca-project.eu/partners/uoxf daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168307580-09Z1V0I0VMLSDXMAM8N2/UOXF.jpeg The Chancellor Masters and Scholars of the University of Oxford https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg The Chancellor Masters and Scholars of the University of Oxford https://www.cineca-project.eu/partners/sickskids daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168939360-DUVNTVSS383H83P7TZ80/sickkids.jpeg The Hospital for Sick Children (SickKids) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg The Hospital for Sick Children (SickKids) https://www.cineca-project.eu/partners/the-hyve daily 0.75 2021-02-11 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1613037563329-AEURT2CBVHEHBQMZXAM3/TheHyve_Logotype-RGB.png The Hyve B.V. (HYVE) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg The Hyve B.V. (HYVE) https://www.cineca-project.eu/partners/umcg daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168307400-VZTUXOC8N0YOPE6UOLBA/umcg.png Academisch Ziekenhuis Groningen (UMCG) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Academisch Ziekenhuis Groningen (UMCG) https://www.cineca-project.eu/partners/hes-so daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558556016479-GMH857UGA3M5VAWHSWRR/1200px-Fachhochschule_Westschweiz_2012_logo.svg.png University of Applied Sciences and Arts - Western Switzerland (HES-SO) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg University of Applied Sciences and Arts - Western Switzerland (HES-SO) https://www.cineca-project.eu/partners/uct daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559169761669-10ZG263QRV7L6LXO3VS1/uct-logo1_rectangular.jpg University of Cape Town https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg University of Cape Town https://www.cineca-project.eu/partners/utartu daily 0.75 2020-01-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559169065720-R8IQC1MKRYB2PNI6S9G8/UTARTU.png TARTU ÜLIKOOL (UTARTU) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg TARTU ÜLIKOOL (UTARTU) https://www.cineca-project.eu/contact-us daily 0.75 2019-08-27 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Contact Us https://www.cineca-project.eu/cohorts/child daily 0.75 2019-09-09 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1559168305368-XRRDO3ZHG791QO3K7WR6/BBMRI-ERIC.png CHILD https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1568016347628-21GYQ07PHVXMGM4AQ70Y/langfr-225px-Flag_of_Europe.svg_-e1550656025583.png CHILD - Canada canada https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1567288621371-I27UIZ6TP7PL1VADW00K/population_1326063.png CHILD - 3.5k participants https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CHILD https://www.cineca-project.eu/short-videos daily 0.75 2023-03-16 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1587598567692-U1Y7S0Q6HW98FKVFWGWW/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA short videos https://www.cineca-project.eu/blog daily 0.75 2020-12-01 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Blog https://www.cineca-project.eu/header daily 0.75 2020-07-30 https://www.cineca-project.eu/training-materials daily 0.75 2020-08-28 https://www.cineca-project.eu/publications daily 0.75 2020-11-12 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Publications https://www.cineca-project.eu/wp1 daily 0.75 2020-12-03 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1605528239048-XGTM1425QM3RY1KUJ4BT/federated+discaovery.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1605102501241-SJ3Z7HSKPHNWG6S29JZX/image4.jpg Work Package 1 - Federated Data Discovery and Querying Fig 2: How the pieces our team are building fit together - (1) Basic and extended query services are being implemented at the sites; (2) The portal will appear later, providing results directly to researchers; (3) Also providing results to the services of other teams for long-running analyses; (4) This enables the federated search across cohorts, including the portal; (5) This is the service registry we are developing. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1605102164522-XMIZMNGF0RRI33U18GIO/image2.png Work Package 1 - Federated Data Discovery and Querying Fig 1: Beacon Network - A search engine across the world's beacons, enabling global discovery of genetic mutations (https://beacon-network.org/). https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999649262-IW0CW7QIQGWHHP9G07M1/csc-logo-teksti-en.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999670791-D59IIAO01DMLN2Q5YDZZ/1200px-Fachhochschule_Westschweiz_2012_logo.svg.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999696195-4NKDA9ECQBF887Q3T70F/erasmus.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999710180-LE8VOYXWUQTGZJ4YBLYQ/McGill_University_CoA.svg.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999714808-SRP7SG2LY7UN9Q2IJH32/sickkids.jpeg Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999723582-B82T8PVXOZJI5C8BTNFG/uct.jpg Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999731471-NXNFARS5H6W9RCL8VZ0Q/UTARTU.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999737298-R8W2Z1E5ZFHFQ90TA98Q/umcg.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999745676-HHIOGCICGF8E0R0EGJCJ/SFU.png Work Package 1 - Federated Data Discovery and Querying https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Work Package 1 - Federated Data Discovery and Querying https://www.cineca-project.eu/wp2 daily 0.75 2021-03-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1605528239048-XGTM1425QM3RY1KUJ4BT/federated+discaovery.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1616584913771-YBJQ8S60ZIBJDSTZ7SXY/image1.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1616584973692-I5KTH28GCV7OVZHS8SU0/image2.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999649262-IW0CW7QIQGWHHP9G07M1/csc-logo-teksti-en.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999670791-D59IIAO01DMLN2Q5YDZZ/1200px-Fachhochschule_Westschweiz_2012_logo.svg.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999696195-4NKDA9ECQBF887Q3T70F/erasmus.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999710180-LE8VOYXWUQTGZJ4YBLYQ/McGill_University_CoA.svg.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999714808-SRP7SG2LY7UN9Q2IJH32/sickkids.jpeg Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999723582-B82T8PVXOZJI5C8BTNFG/uct.jpg Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999731471-NXNFARS5H6W9RCL8VZ0Q/UTARTU.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999737298-R8W2Z1E5ZFHFQ90TA98Q/umcg.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1606999745676-HHIOGCICGF8E0R0EGJCJ/SFU.png Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Work Package 2 - Interoperable Authentication and Authorisation Infrastructure https://www.cineca-project.eu/wp3 daily 0.75 2021-07-27 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1627388721105-MKJTMDG1TIYBO8W2IKE4/harmonized-metadata_1.png Work Package 3 - Cohort Level Meta Data Representation https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620045732674-AEA97UIBLHB6KCGYRSCN/image2.png Work Package 3 - Cohort Level Meta Data Representation Fig 2. Standardisation strategy and engagement stakeholders https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620045096176-T4BR0TA3YYW5UTVXNKU5/image3.png Work Package 3 - Cohort Level Meta Data Representation Fig 1. CINECA metadata standardisation workflow https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620045814227-IB1PPCQK6UCI2PK9HMU9/image5.png Work Package 3 - Cohort Level Meta Data Representation Fig 3. Text mining pipeline for the extraction of biomedical entities from unstructured text and mapping to standard ontology terms https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1620046316546-3GD9G4LGZA0KN1A93TL1/image1.png Work Package 3 - Cohort Level Meta Data Representation Fig 3. 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daily 0.75 2021-08-31 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1630420148103-UN0SQSPH39SHO2BN220X/derek-finch-Gi8Q8IfpxdY-unsplash.jpeg CINECA Synthetic Datasets - Make it stand out Photo by Derek Finch on Unsplash https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1630420057314-X5P4SKLAF9M8G5PCULD7/2-Figure1-1.png CINECA Synthetic Datasets - Make it stand out Figure 1: The DataSynthesizer system architecture (Ping et al, DataSynthesizer: Privacy-Preserving Synthetic Datasets, 2017, Proceedings of the 29th International Conference on Scientific and Statistical Database Management) https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA Synthetic Datasets https://www.cineca-project.eu/work-packages-1 daily 0.75 2021-09-16 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https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg EC Working Groups https://www.cineca-project.eu/deliverables-1 daily 0.75 2022-03-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Deliverables (Copy) https://www.cineca-project.eu/work-packages-2 daily 0.75 2022-03-10 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558625907741-2LZYPNW7PXPXGXFUQQJQ/workpackages.png Work packages (Copy) Overview of the workflow for CINECA https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Work packages (Copy) https://www.cineca-project.eu/cineca-synthetic-datasets daily 0.75 2023-04-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA Synthetic Cohort Datasets https://www.cineca-project.eu/synthetic-data/scd-europe-uk1 daily 0.75 2022-07-06 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA synthetic cohort EUROPE UK1 https://www.cineca-project.eu/synthetic-data/scd-europe-ch-sib daily 0.75 2022-07-06 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA synthetic cohort Europe CH SIB https://www.cineca-project.eu/synthetic-data/sdc-africa-h3abionet-v1 daily 0.75 2022-07-06 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA synthetic cohort Africa H3ABioNet v1 https://www.cineca-project.eu/synthetic-data/sdc-na-canada-child-v1 daily 0.75 2022-07-06 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA synthetic cohort NA Canada CHILD v1 https://www.cineca-project.eu/virtual-platform daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Analysis Platform https://www.cineca-project.eu/virtual-platform/harmonization/gecko daily 0.75 2023-04-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg GECKO https://www.cineca-project.eu/cineca-virtual-platform-copy daily 0.75 2023-04-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg CINECA Virtual Platform (Copy) https://www.cineca-project.eu/virtual-platform/discovery daily 0.75 2023-04-25 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Discovery https://www.cineca-project.eu/virtual-platform/use-cases2 daily 0.75 2023-07-13 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Use Cases https://www.cineca-project.eu/researchers-journey-copy daily 0.75 2023-06-05 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Researcher’s Journey (Copy) https://www.cineca-project.eu/learning-pathway daily 0.75 2023-06-15 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/0dec5476-23f6-4c4f-b140-1f9c621ceb07/PathwayScreenshot2.png Learning Pathway CINECA project’s learning pathway developed and hosted on the EMBL-EBI Training portal. https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Learning Pathway https://www.cineca-project.eu/virtual-platform/federated-data-discovery daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Data Discovery https://www.cineca-project.eu/virtual-platform/federated-data-access daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Data access https://www.cineca-project.eu/virtual-platform/data-harmonization daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Data Harmonization https://www.cineca-project.eu/virtual-platform/federated-data-analysis daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Data Analysis https://www.cineca-project.eu/virtual-platform/federated-healthcare-applications daily 0.75 2023-08-24 https://images.squarespace-cdn.com/content/v1/5cc2c7b2d86cc9589d33dfcc/1558964300684-16C7P0C4JOP8G0AZYL4K/CINECA_news+announcement_c_Spencer_Phillips_EMBL-EBI_780x400.jpg Federated Healthcare Applications